KEGG   PATHWAY: doe00020
Entry
doe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Denitratisoma oestradiolicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
doe00020  Citrate cycle (TCA cycle)
doe00020

Module
doe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:doe00020]
doe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:doe00020]
doe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:doe00020]
doe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:doe00020]
doe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:doe00020]
Other DBs
GO: 0006099
Organism
Denitratisoma oestradiolicum [GN:doe]
Gene
DENOEST_0641  Citrate synthase [KO:K01647] [EC:2.3.3.1]
DENOEST_2142  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
DENOEST_2151  acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DENOEST_0600  idh; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DENOEST_0602  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DENOEST_2141  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
DENOEST_2140  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
DENOEST_1535  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
DENOEST_2139  odhL; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DENOEST_3559  korA; 2-ketoglutarate: NADP oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DENOEST_3560  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DENOEST_1540  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
DENOEST_1539  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
DENOEST_2145  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DENOEST_2144  sdhB; succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DENOEST_2147  Succinate dehydrogenase [KO:K00241]
DENOEST_2146  Succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DENOEST_1470  Fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
DENOEST_2503  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
DENOEST_2149  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DENOEST_1261  pyc; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DENOEST_3164  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
DENOEST_1532  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
DENOEST_1533  pdhB; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DENOEST_1530  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
DENOEST_1529  porB; Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
DENOEST_1531  porC; Pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
doe00010  Glycolysis / Gluconeogenesis
doe00053  Ascorbate and aldarate metabolism
doe00061  Fatty acid biosynthesis
doe00071  Fatty acid degradation
doe00190  Oxidative phosphorylation
doe00220  Arginine biosynthesis
doe00250  Alanine, aspartate and glutamate metabolism
doe00280  Valine, leucine and isoleucine degradation
doe00350  Tyrosine metabolism
doe00470  D-Amino acid metabolism
doe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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