KEGG   PATHWAY: dpol03008
Entry
dpol03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Dreissena polymorpha (zebra mussel)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
dpol03008  Ribosome biogenesis in eukaryotes
dpol03008

Organism
Dreissena polymorpha (zebra mussel) [GN:dpol]
Gene
127837743  casein kinase II subunit beta [KO:K03115]
127838299  casein kinase II subunit beta [KO:K03115]
127843995  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
127843996  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
127878149  nucleolar protein 6-like isoform X1 [KO:K14544]
127882183  ribosomal RNA-processing protein 7 homolog A-like isoform X1 [KO:K14545]
127836935  ribosomal RNA-processing protein 7 homolog A-like [KO:K14545]
127874982  WD repeat-containing protein 43-like [KO:K14546]
127846083  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
127879165  LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
127862220  HEAT repeat-containing protein 1-like isoform X1 [KO:K14550]
127863579  WD repeat-containing protein 75-like isoform X1 [KO:K14552]
127855719  WD repeat-containing protein 75-like [KO:K14552]
127856573  U3 small nucleolar RNA-associated protein 18 homolog isoform X1 [KO:K14553]
127853130  WD repeat-containing protein 36-like [KO:K14554]
127865749  transducin beta-like protein 3 [KO:K14555]
127852261  WD repeat-containing protein 3-like [KO:K14556]
127853061  WD repeat-containing protein 3-like [KO:K14556]
127869011  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
127863431  periodic tryptophan protein 2 homolog isoform X1 [KO:K14558]
127880010  U3 small nucleolar ribonucleoprotein protein MPP10-like isoform X1 [KO:K14559]
127837208  U3 small nucleolar ribonucleoprotein protein IMP3-like isoform X1 [KO:K14560]
127879439  U3 small nucleolar ribonucleoprotein protein IMP4-like [KO:K14561]
127855093  rRNA 2'-O-methyltransferase fibrillarin-like isoform X1 [KO:K14563] [EC:2.1.1.-]
127841442  nucleolar protein 56-like isoform X1 [KO:K14564]
127842711  nucleolar protein 56-like isoform X1 [KO:K14564]
127847600  nucleolar protein 58-like [KO:K14565]
127847601  nucleolar protein 58-like isoform X1 [KO:K14565]
127868007  NHP2-like protein 1 [KO:K12845]
127836394  H/ACA ribonucleoprotein complex subunit DKC1-like [KO:K11131] [EC:5.4.99.-]
127842967  H/ACA ribonucleoprotein complex subunit 2-like protein isoform X1 [KO:K11129]
127869016  LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 1-like [KO:K11128]
127872915  rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
127838009  ribonuclease 3-like isoform X1 [KO:K03685] [EC:3.1.26.3]
127847107  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
127847715  RNA cytidine acetyltransferase-like [KO:K14521] [EC:2.3.1.-]
127867514  RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
127862024  ribonucleases P/MRP protein subunit POP1-like isoform X1 [KO:K01164] [EC:3.1.26.5]
127874379  ribonuclease P protein subunit p29-like [KO:K03538] [EC:3.1.26.5]
127871277  ribonuclease P/MRP protein subunit POP5-like isoform X1 [KO:K03537] [EC:3.1.26.5]
127854933  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
127873390  ribonuclease P protein subunit p20-like [KO:K14527] [EC:3.1.26.5]
127841257  ribonuclease P protein subunit p30-like isoform X1 [KO:K03539] [EC:3.1.26.5]
127842883  ribonuclease P protein subunit p30-like isoform X1 [KO:K03539] [EC:3.1.26.5]
127867781  ribonuclease P protein subunit p40-like isoform X1 [KO:K14530] [EC:3.1.26.5]
127851202  LOW QUALITY PROTEIN: RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
127864136  oligoribonuclease, mitochondrial-like [KO:K13288] [EC:3.1.-.-]
127878905  probable oligoribonuclease isoform X1 [KO:K13288] [EC:3.1.-.-]
127839885  5'-3' exoribonuclease 1-like [KO:K12618] [EC:3.1.13.-]
127880721  5'-3' exoribonuclease 1-like [KO:K12618] [EC:3.1.13.-]
127870862  5'-3' exoribonuclease 2-like isoform X1 [KO:K12619] [EC:3.1.13.-]
127859498  GTP-binding protein 4-like [KO:K06943]
127860317  uncharacterized protein LOC127860317 [KO:K14537]
127881524  guanine nucleotide-binding protein-like 3 homolog isoform X1 [KO:K14538]
127847485  nuclear valosin-containing protein-like isoform X1 [KO:K14571]
127852617  midasin-like [KO:K14572]
127853398  RNA-binding protein 28-like [KO:K14573]
127853573  RNA-binding protein 28-like [KO:K14573]
127844357  RNA-binding protein NOB1-like [KO:K11883]
127855001  GTP-binding nuclear protein Ran [KO:K07936]
127857673  exportin-1-like [KO:K14290]
127858011  60S ribosomal export protein NMD3-like [KO:K07562]
127875036  nuclear RNA export factor 1-like [KO:K14284]
127877967  NTF2-related export protein 2-like [KO:K14285]
127844177  eukaryotic translation initiation factor 6 isoform X1 [KO:K03264]
127848205  ribosome maturation protein SBDS-like [KO:K14574]
127877553  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
127831261  LOW QUALITY PROTEIN: large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
127880722  large subunit GTPase 1 homolog isoform X1 [KO:K14539] [EC:3.6.1.-]
127876226  ribosome biogenesis protein SPATA5-like isoform X1 [KO:K14575]
127879301  adenylate kinase isoenzyme 6-like [KO:K18532] [EC:2.7.4.3]
127850160  serine/threonine-protein kinase RIO1-like [KO:K07178] [EC:2.7.11.1]
127851923  serine/threonine-protein kinase RIO1-like [KO:K07178] [EC:2.7.11.1]
127880293  uncharacterized protein LOC127880293 [KO:K07179] [EC:2.7.11.1]
127851982  small subunit ribosomal RNA [KO:K01979]
127832867  small subunit ribosomal RNA [KO:K01979]
127832874  large subunit ribosomal RNA [KO:K01982]
127832873  large subunit ribosomal RNA [KO:K01982]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
dpol03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system