KEGG   PATHWAY: dpu00020
Entry
dpu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Deinococcus puniceus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dpu00020  Citrate cycle (TCA cycle)
dpu00020

Module
dpu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dpu00020]
dpu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dpu00020]
dpu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dpu00020]
dpu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dpu00020]
dpu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dpu00020]
Other DBs
GO: 0006099
Organism
Deinococcus puniceus [GN:dpu]
Gene
SU48_09070  citrate synthase [KO:K01647] [EC:2.3.3.1]
SU48_05675  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SU48_00765  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SU48_08740  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SU48_01395  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
SU48_01405  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SU48_00710  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SU48_13295  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SU48_07355  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
SU48_07360  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SU48_08585  fumarate reductase [KO:K00239] [EC:1.3.5.1]
SU48_08590  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
SU48_08575  succinate dehydrogenase [KO:K00241]
SU48_08580  succinate dehydrogenase [KO:K00242]
SU48_00490  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SU48_02680  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SU48_04470  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SU48_10585  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
SU48_03775  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
SU48_03770  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
SU48_10580  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dpu00010  Glycolysis / Gluconeogenesis
dpu00053  Ascorbate and aldarate metabolism
dpu00061  Fatty acid biosynthesis
dpu00071  Fatty acid degradation
dpu00190  Oxidative phosphorylation
dpu00220  Arginine biosynthesis
dpu00250  Alanine, aspartate and glutamate metabolism
dpu00280  Valine, leucine and isoleucine degradation
dpu00350  Tyrosine metabolism
dpu00470  D-Amino acid metabolism
dpu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system