KEGG   PATHWAY: dra00020
Entry
dra00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Deinococcus radiodurans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dra00020  Citrate cycle (TCA cycle)
dra00020

Module
dra_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dra00020]
dra_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dra00020]
dra_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dra00020]
dra_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dra00020]
dra_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dra00020]
Other DBs
GO: 0006099
Organism
Deinococcus radiodurans [GN:dra]
Gene
DR_0757  citrate synthase [KO:K01647] [EC:2.3.3.1]
DR_1720  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DR_1540  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DR_0287  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
DR_0083  2-oxoglutarate dehydrogenase, dihydrolipoamide succinyltransferase E2 component [KO:K00658] [EC:2.3.1.61]
DR_2526  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
DR_2370  pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component [KO:K00382] [EC:1.8.1.4]
DR_1248  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
DR_1247  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
DR_0952  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DR_0951  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DR_0954  succinate dehydrogenase, cytochrome subunit [KO:K00241]
DR_0953  succinate dehydrogenase, hydrophobic subunit SdhD [KO:K00242]
DR_2627  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DR_0325  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DR_0977  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DR_0257  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
DR_0256  pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dra00010  Glycolysis / Gluconeogenesis
dra00053  Ascorbate and aldarate metabolism
dra00061  Fatty acid biosynthesis
dra00071  Fatty acid degradation
dra00190  Oxidative phosphorylation
dra00220  Arginine biosynthesis
dra00250  Alanine, aspartate and glutamate metabolism
dra00280  Valine, leucine and isoleucine degradation
dra00350  Tyrosine metabolism
dra00470  D-Amino acid metabolism
dra00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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