KEGG   PATHWAY: eam00020
Entry
eam00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Erwinia amylovora CFBP1430
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eam00020  Citrate cycle (TCA cycle)
eam00020

Module
eam_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eam00020]
eam_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eam00020]
eam_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eam00020]
eam_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eam00020]
eam_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eam00020]
Other DBs
GO: 0006099
Organism
Erwinia amylovora CFBP1430 [GN:eam]
Gene
EAMY_1163  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
EAMY_1905  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EAMY_2809  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EAMY_1537  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EAMY_1168  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EAMY_1169  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
EAMY_2835  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EAMY_1171  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
EAMY_1170  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
EAMY_1166  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EAMY_1167  sdhB; succinate dehydrogenase, iron sulfur protein [KO:K00240] [EC:1.3.5.1]
EAMY_1164  sdhC; succinate dehydrogenase, cytochrome b556 [KO:K00241]
EAMY_1165  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
EAMY_1558  fumB; fumarate hydratase, putative [KO:K01676] [EC:4.2.1.2]
EAMY_1735  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
EAMY_0298  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EAMY_0115  mqo; malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
EAMY_1781  mqo2; malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
EAMY_3443  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EAMY_2837  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
EAMY_2836  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eam00010  Glycolysis / Gluconeogenesis
eam00053  Ascorbate and aldarate metabolism
eam00061  Fatty acid biosynthesis
eam00071  Fatty acid degradation
eam00190  Oxidative phosphorylation
eam00220  Arginine biosynthesis
eam00250  Alanine, aspartate and glutamate metabolism
eam00280  Valine, leucine and isoleucine degradation
eam00350  Tyrosine metabolism
eam00470  D-Amino acid metabolism
eam00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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