KEGG   PATHWAY: ear00020
Entry
ear00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella aerogenes EA1509E
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ear00020  Citrate cycle (TCA cycle)
ear00020

Module
ear_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ear00020]
ear_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ear00020]
ear_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ear00020]
ear_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ear00020]
ear_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ear00020]
Other DBs
GO: 0006099
Organism
Klebsiella aerogenes EA1509E [GN:ear]
Gene
CCG31141  Citrate synthase (si) (EC 2.3.3.1) [KO:K01647] [EC:2.3.3.1]
CCG29669  Aconitate hydratase (EC 4.2.1.3) [KO:K01681] [EC:4.2.1.3]
CCG31808  Putative enzyme [KO:K01681] [EC:4.2.1.3]
CCG31701  Aconitate hydratase 2 (EC 4.2.1.3) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CCG30596  Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) [KO:K00031] [EC:1.1.1.42]
CCG31136  2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) [KO:K00164] [EC:1.2.4.2]
CCG31135  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) [KO:K00658] [EC:2.3.1.61]
CCG31706  Glutathione reductase (EC 1.8.1.7) [KO:K00382] [EC:1.8.1.4]
CCG31133  Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) [KO:K01902] [EC:6.2.1.5]
CCG31134  Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) [KO:K01903] [EC:6.2.1.5]
CCG31138  Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) [KO:K00239] [EC:1.3.5.1]
CCG31137  Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) [KO:K00240] [EC:1.3.5.1]
CCG31140  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
CCG31139  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
CCG32191  Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) [KO:K00244] [EC:1.3.5.1]
CCG32192  Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) [KO:K00245] [EC:1.3.5.1]
CCG32193  Fumarate reductase subunit C [KO:K00246]
CCG32194  Fumarate reductase subunit D [KO:K00247]
CCG30251  Fumarate hydratase class I, anaerobic (EC 4.2.1.2) [KO:K01676] [EC:4.2.1.2]
CCG30283  Fumarate hydratase class I, aerobic (EC 4.2.1.2) [KO:K01676] [EC:4.2.1.2]
CCG30282  Fumarate hydratase class II (EC 4.2.1.2) [KO:K01679] [EC:4.2.1.2]
CCG30457  FIG00732625: hypothetical protein [KO:K01675] [EC:4.2.1.2]
CCG33079  Malate dehydrogenase (EC 1.1.1.37) [KO:K00024] [EC:1.1.1.37]
CCG28987  Malate:quinone oxidoreductase (EC 1.1.5.4) [KO:K00116] [EC:1.1.5.4]
CCG30242  Malate:quinone oxidoreductase (EC 1.1.5.4) [KO:K00116] [EC:1.1.5.4]
CCG32951  Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) [KO:K01610] [EC:4.1.1.49]
CCG31708  Pyruvate dehydrogenase E1 component (EC 1.2.4.1) [KO:K00163] [EC:1.2.4.1]
CCG31707  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) [KO:K00627] [EC:2.3.1.12]
CCG29762  Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ear00010  Glycolysis / Gluconeogenesis
ear00053  Ascorbate and aldarate metabolism
ear00061  Fatty acid biosynthesis
ear00071  Fatty acid degradation
ear00190  Oxidative phosphorylation
ear00220  Arginine biosynthesis
ear00250  Alanine, aspartate and glutamate metabolism
ear00280  Valine, leucine and isoleucine degradation
ear00350  Tyrosine metabolism
ear00470  D-Amino acid metabolism
ear00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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