KEGG   PATHWAY: ebb00020
Entry
ebb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacteriaceae bacterium bta3-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ebb00020  Citrate cycle (TCA cycle)
ebb00020

Module
ebb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ebb00020]
ebb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ebb00020]
ebb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ebb00020]
ebb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ebb00020]
ebb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ebb00020]
Other DBs
GO: 0006099
Organism
Enterobacteriaceae bacterium bta3-1 [GN:ebb]
Gene
F652_382  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
F652_1156  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
F652_2546  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
F652_1099  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
F652_387  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
F652_388  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
F652_2548  Glutathione reductase [KO:K00382] [EC:1.8.1.4]
F652_3524  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
F652_390  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
F652_389  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
F652_385  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F652_386  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
F652_383  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
F652_384  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
F652_3853  Succinate dehydrogenase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
F652_3852  Succinate dehydrogenase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
F652_3851  Fumarate reductase subunit C [KO:K00246]
F652_3850  Fumarate reductase subunit D [KO:K00247]
F652_1651  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
F652_1305  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
F652_1870  Putative transcriptional regulator [KO:K01774] [EC:4.2.1.2]
F652_3905  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F652_895  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
F652_3104  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
F652_2550  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
F652_2549  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
F652_1237  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ebb00010  Glycolysis / Gluconeogenesis
ebb00053  Ascorbate and aldarate metabolism
ebb00061  Fatty acid biosynthesis
ebb00071  Fatty acid degradation
ebb00190  Oxidative phosphorylation
ebb00220  Arginine biosynthesis
ebb00250  Alanine, aspartate and glutamate metabolism
ebb00280  Valine, leucine and isoleucine degradation
ebb00350  Tyrosine metabolism
ebb00470  D-Amino acid metabolism
ebb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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