KEGG   PATHWAY: ebc00020
Entry
ebc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacteriaceae bacterium ENNIH2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ebc00020  Citrate cycle (TCA cycle)
ebc00020

Module
ebc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ebc00020]
ebc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ebc00020]
ebc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ebc00020]
ebc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ebc00020]
ebc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ebc00020]
Other DBs
GO: 0006099
Organism
Enterobacteriaceae bacterium ENNIH2 [GN:ebc]
Gene
C2U52_28670  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
C2U52_22935  citrate synthase [KO:K01647] [EC:2.3.3.1]
C2U52_23995  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C2U52_30150  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C2U52_02770  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C2U52_20180  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C2U52_28640  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C2U52_28635  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C2U52_02785  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C2U52_28625  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C2U52_28630  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C2U52_28650  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C2U52_11175  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
C2U52_28645  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C2U52_28660  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
C2U52_28655  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C2U52_05020  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
C2U52_05025  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
C2U52_05030  fumarate reductase subunit FrdC [KO:K00246]
C2U52_05035  fumarate reductase subunit FrdD [KO:K00247]
C2U52_25035  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C2U52_21295  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C2U52_21300  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C2U52_20820  fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
C2U52_11105  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C2U52_17730  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C2U52_10195  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C2U52_02795  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C2U52_02790  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
C2U52_23780  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
C2U52_22740  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ebc00010  Glycolysis / Gluconeogenesis
ebc00053  Ascorbate and aldarate metabolism
ebc00061  Fatty acid biosynthesis
ebc00071  Fatty acid degradation
ebc00190  Oxidative phosphorylation
ebc00220  Arginine biosynthesis
ebc00250  Alanine, aspartate and glutamate metabolism
ebc00280  Valine, leucine and isoleucine degradation
ebc00350  Tyrosine metabolism
ebc00470  D-Amino acid metabolism
ebc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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