KEGG   PATHWAY: ebr00020
Entry
ebr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli B REL606
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ebr00020  Citrate cycle (TCA cycle)
ebr00020

Module
ebr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ebr00020]
ebr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ebr00020]
ebr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ebr00020]
ebr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ebr00020]
ebr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ebr00020]
Other DBs
GO: 0006099
Organism
Escherichia coli B REL606 [GN:ebr]
Gene
ECB_00680  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ECB_01253  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ECB_00724  ybhJ; predicted hydratase [KO:K01681] [EC:4.2.1.3]
ECB_00117  acnB; aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECB_01134  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ECB_00685  sucA; alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
ECB_00686  sucB; dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
ECB_00115  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECB_00688  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ECB_00687  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ECB_00683  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECB_00684  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
ECB_00681  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
ECB_00682  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
ECB_04026  frdA; fumarate reductase [KO:K00244] [EC:1.3.5.1]
ECB_04025  frdB; fumarate reductase (anaerobic), Fe-S subunit [KO:K00245] [EC:1.3.5.1]
ECB_04024  frdC; fumarate reductase subunit C [KO:K00246]
ECB_04023  frdD; fumarate reductase subunit D [KO:K00247]
ECB_01581  fumA; fumarate hydratase (fumarase A), aerobic Class I [KO:K01676] [EC:4.2.1.2]
ECB_03993  fumB; anaerobic class I fumarate hydratase (fumarase B) [KO:K01676] [EC:4.2.1.2]
ECB_01580  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ECB_01644  ydhZ; hypothetical protein [KO:K01675] [EC:4.2.1.2]
ECB_02760  yggD; predicted DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
ECB_03096  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ECB_02137  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ECB_03255  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECB_00113  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
ECB_00114  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
ECB_01349  ydbK; fused predicted pyruvate-flavodoxin oxidoreductase: conserved hypothetical protein/conserved hypothetical protein/FeS binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ebr00010  Glycolysis / Gluconeogenesis
ebr00053  Ascorbate and aldarate metabolism
ebr00061  Fatty acid biosynthesis
ebr00071  Fatty acid degradation
ebr00190  Oxidative phosphorylation
ebr00220  Arginine biosynthesis
ebr00250  Alanine, aspartate and glutamate metabolism
ebr00280  Valine, leucine and isoleucine degradation
ebr00350  Tyrosine metabolism
ebr00470  D-Amino acid metabolism
ebr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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