KEGG   PATHWAY: ebu00020
Entry
ebu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacteriaceae bacterium S05
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ebu00020  Citrate cycle (TCA cycle)
ebu00020

Module
ebu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ebu00020]
ebu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ebu00020]
ebu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ebu00020]
ebu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ebu00020]
ebu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ebu00020]
Other DBs
GO: 0006099
Organism
Enterobacteriaceae bacterium S05 [GN:ebu]
Gene
CUC76_09010  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CUC76_07720  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CUC76_04325  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CUC76_11010  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CUC76_05535  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CUC76_07685  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
CUC76_07680  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CUC76_10275  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CUC76_11035  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CUC76_07670  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CUC76_07675  succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CUC76_07695  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CUC76_07690  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CUC76_07705  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
CUC76_07700  sdhD; succinate:quinone oxidoreductase subunit D [KO:K00242]
CUC76_13305  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CUC76_13310  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CUC76_13315  fumarate reductase subunit C [KO:K00246]
CUC76_13320  fumarate reductase subunit D [KO:K00247]
CUC76_03270  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CUC76_03435  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CUC76_03430  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CUC76_00330  fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
CUC76_18090  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CUC76_03225  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
CUC76_23270  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
CUC76_25185  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CUC76_17395  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CUC76_11045  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CUC76_11040  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CUC76_10270  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
CUC76_03840  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ebu00010  Glycolysis / Gluconeogenesis
ebu00053  Ascorbate and aldarate metabolism
ebu00061  Fatty acid biosynthesis
ebu00071  Fatty acid degradation
ebu00190  Oxidative phosphorylation
ebu00220  Arginine biosynthesis
ebu00250  Alanine, aspartate and glutamate metabolism
ebu00280  Valine, leucine and isoleucine degradation
ebu00350  Tyrosine metabolism
ebu00470  D-Amino acid metabolism
ebu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system