KEGG   PATHWAY: ecc00020
Entry
ecc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O6:K2:H1 CFT073 (UPEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecc00020  Citrate cycle (TCA cycle)
ecc00020

Module
ecc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecc00020]
ecc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecc00020]
ecc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecc00020]
ecc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecc00020]
ecc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecc00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O6:K2:H1 CFT073 (UPEC) [GN:ecc]
Gene
c0796  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
c1745  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
c0848  ybhJ; Hypothetical protein ybhJ [KO:K01681] [EC:4.2.1.3]
c0147  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
c1517  icdA; Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
c0803  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
c5032  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
c0804  sucB; Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
c5034  Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
c5035  Putative 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
c0145  lpdA; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
c0806  sucD; Succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
c5037  Succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
c0805  sucC; Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
c5036  Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
c0801  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
c0802  sdhB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
c0798  sdhC; Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
c0800  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
c5242  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
c5241  frdB; Fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
c5240  frdC; Fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
c5239  frdD; Fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
c5127  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
c2004  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
c2003  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
c2069  ydhZ; Hypothetical protein ydhZ [KO:K01675] [EC:4.2.1.2]
c3512  yggD; Hypothetical protein yggD [KO:K01774] [EC:4.2.1.2]
c3991  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
c2751  yojH; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
c4176  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
c0142  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
c1823  ydbK; Probable pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecc00010  Glycolysis / Gluconeogenesis
ecc00053  Ascorbate and aldarate metabolism
ecc00061  Fatty acid biosynthesis
ecc00071  Fatty acid degradation
ecc00190  Oxidative phosphorylation
ecc00220  Arginine biosynthesis
ecc00250  Alanine, aspartate and glutamate metabolism
ecc00280  Valine, leucine and isoleucine degradation
ecc00350  Tyrosine metabolism
ecc00470  D-Amino acid metabolism
ecc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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