KEGG   PATHWAY: ecd00020
Entry
ecd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli K-12 DH10B
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecd00020  Citrate cycle (TCA cycle)
ecd00020

Module
ecd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecd00020]
ecd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecd00020]
ecd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecd00020]
ecd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecd00020]
ecd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecd00020]
Other DBs
GO: 0006099
Organism
Escherichia coli K-12 DH10B [GN:ecd]
Gene
ECDH10B_0787  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ECDH10B_1393  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
ECDH10B_0839  ybhJ; predicted hydratase [KO:K01681] [EC:4.2.1.3]
ECDH10B_0098  acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECDH10B_1208  icd; isocitrate dehydrogenase, specific for NADP+ [KO:K00031] [EC:1.1.1.42]
ECDH10B_0792  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
ECDH10B_0793  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
ECDH10B_0096  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
ECDH10B_0795  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
ECDH10B_0794  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
ECDH10B_0790  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECDH10B_0791  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
ECDH10B_0788  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
ECDH10B_0789  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
ECDH10B_4349  frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ECDH10B_4347  frdC; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00246]
ECDH10B_4346  frdD; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00247]
ECDH10B_1745  fumA; fumarate hydratase (fumarase A), aerobic Class I [KO:K01676] [EC:4.2.1.2]
ECDH10B_4314  fumB; anaerobic class I fumarate hydratase (fumarase B) [KO:K01676] [EC:4.2.1.2]
ECDH10B_1744  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
ECDH10B_1809  ydhZ; predicted protein [KO:K01675] [EC:4.2.1.2]
ECDH10B_3104  yggD; predicted DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
ECDH10B_3413  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
ECDH10B_2367  mqo; malate dehydrogenase, FAD/NAD(P)-binding domain [KO:K00116] [EC:1.1.5.4]
ECDH10B_3578  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECDH10B_0094  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
ECDH10B_0095  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
ECDH10B_1502  ydbK; fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein; conserved protein; FeS binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecd00010  Glycolysis / Gluconeogenesis
ecd00053  Ascorbate and aldarate metabolism
ecd00061  Fatty acid biosynthesis
ecd00071  Fatty acid degradation
ecd00190  Oxidative phosphorylation
ecd00220  Arginine biosynthesis
ecd00250  Alanine, aspartate and glutamate metabolism
ecd00280  Valine, leucine and isoleucine degradation
ecd00350  Tyrosine metabolism
ecd00470  D-Amino acid metabolism
ecd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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