KEGG   PATHWAY: eci00020
Entry
eci00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O18:K1:H7 UTI89 (UPEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eci00020  Citrate cycle (TCA cycle)
eci00020

Module
eci_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eci00020]
eci_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eci00020]
eci_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eci00020]
eci_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eci00020]
eci_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eci00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O18:K1:H7 UTI89 (UPEC) [GN:eci]
Gene
UTI89_C0715  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
UTI89_C1547  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
UTI89_C0769  ybhJ; hypothetical protein YbhJ [KO:K01681] [EC:4.2.1.3]
UTI89_C0131  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
UTI89_C1266  icdA; NADP Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
UTI89_C0721  sucA; 2-oxoglutarate dehydrogenase decarboxylase component [KO:K00164] [EC:1.2.4.2]
UTI89_C4630  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
UTI89_C0722  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
UTI89_C4632  dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
UTI89_C4633  subunit of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
UTI89_C0129  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
UTI89_C0724  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
UTI89_C4635  SucD, succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
UTI89_C0723  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
UTI89_C4634  SucC, succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
UTI89_C0719  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
UTI89_C0720  sdhB; succinate dehydrogenase, iron sulfur protein [KO:K00240] [EC:1.3.5.1]
UTI89_C0717  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
UTI89_C0718  sdhD; succinate dehydrogenase hydrophobic subunit [KO:K00242]
UTI89_C4754  frdA; flavoprotein subunit of fumarate reductase [KO:K00244] [EC:1.3.5.1]
UTI89_C4753  frdB; iron-sulfur protein subunit of fumarate reductase [KO:K00245] [EC:1.3.5.1]
UTI89_C4752  frdC; fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
UTI89_C4751  frdD; fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
UTI89_C4715  fumB; fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
UTI89_C1800  fumA; fumarase A [KO:K01676] [EC:4.2.1.2]
UTI89_C1799  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
UTI89_C1867  ydhZ; hypothetical protein [KO:K01675] [EC:4.2.1.2]
UTI89_C3317  yggD; putative transcriptional regulator [KO:K01774] [EC:4.2.1.2]
UTI89_C3667  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
UTI89_C2490  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
UTI89_C3903  pckA; ATP phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
UTI89_C0127  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
UTI89_C0128  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
UTI89_C1619  ydbK; probable pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eci00010  Glycolysis / Gluconeogenesis
eci00053  Ascorbate and aldarate metabolism
eci00061  Fatty acid biosynthesis
eci00071  Fatty acid degradation
eci00190  Oxidative phosphorylation
eci00220  Arginine biosynthesis
eci00250  Alanine, aspartate and glutamate metabolism
eci00280  Valine, leucine and isoleucine degradation
eci00350  Tyrosine metabolism
eci00470  D-Amino acid metabolism
eci00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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