KEGG   PATHWAY: eck00020
Entry
eck00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli 55989 (EAEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eck00020  Citrate cycle (TCA cycle)
eck00020

Module
eck_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eck00020]
eck_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eck00020]
eck_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eck00020]
eck_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eck00020]
eck_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eck00020]
Other DBs
GO: 0006099
Organism
Escherichia coli 55989 (EAEC) [GN:eck]
Gene
EC55989_0703  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
EC55989_0753  ybhJ; putative enzyme [KO:K01681] [EC:4.2.1.3]
EC55989_1437  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
EC55989_0111  acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EC55989_1249  icd; isocitrate dehydrogenase, specific for NADP+; e14 prophage [KO:K00031] [EC:1.1.1.42]
EC55989_0709  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
EC55989_0710  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
EC55989_0109  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
EC55989_0712  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
EC55989_0711  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
EC55989_0707  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EC55989_0708  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
EC55989_0705  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
EC55989_0706  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
EC55989_4711  frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
EC55989_4710  frdB; fumarate reductase (anaerobic), Fe-S subunit [KO:K00245] [EC:1.3.5.1]
EC55989_4709  frdC; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00246]
EC55989_4708  frdD; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00247]
EC55989_1778  fumA; fumarate hydratase (fumarase A), aerobic Class I [KO:K01676] [EC:4.2.1.2]
EC55989_4613  fumB; anaerobic class I fumarate hydratase (fumarase B) [KO:K01676] [EC:4.2.1.2]
EC55989_1777  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
EC55989_1842  ydhZ; conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
EC55989_3222  yggD; putative DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
EC55989_3649  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
EC55989_2465  mqo; malate dehydrogenase, FAD/NAD(P)-binding domain [KO:K00116] [EC:1.1.5.4]
EC55989_3809  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EC55989_0107  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
EC55989_0108  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
EC55989_1513  ydbK; putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eck00010  Glycolysis / Gluconeogenesis
eck00053  Ascorbate and aldarate metabolism
eck00061  Fatty acid biosynthesis
eck00071  Fatty acid degradation
eck00190  Oxidative phosphorylation
eck00220  Arginine biosynthesis
eck00250  Alanine, aspartate and glutamate metabolism
eck00280  Valine, leucine and isoleucine degradation
eck00350  Tyrosine metabolism
eck00470  D-Amino acid metabolism
eck00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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