KEGG   PATHWAY: ecla00020
Entry
ecla00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter hormaechei subsp. hoffmannii ECNIH3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecla00020  Citrate cycle (TCA cycle)
ecla00020

Module
ecla_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecla00020]
ecla_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecla00020]
ecla_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecla00020]
ecla_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecla00020]
ecla_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecla00020]
Other DBs
GO: 0006099
Organism
Enterobacter hormaechei subsp. hoffmannii ECNIH3 [GN:ecla]
Gene
ECNIH3_06375  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ECNIH3_11705  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ECNIH3_03810  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECNIH3_08465  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ECNIH3_06400  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
ECNIH3_06405  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ECNIH3_03795  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECNIH3_06415  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ECNIH3_06410  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ECNIH3_06390  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
ECNIH3_06395  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ECNIH3_06380  sdhC; succinate dehydrogenase [KO:K00241]
ECNIH3_06385  sdhD; succinate dehydrogenase [KO:K00242]
ECNIH3_02185  fumarate reductase [KO:K00244] [EC:1.3.5.1]
ECNIH3_02180  fumarate reductase [KO:K00245] [EC:1.3.5.1]
ECNIH3_02175  fumarate reductase [KO:K00246]
ECNIH3_02170  fumarate reductase [KO:K00247]
ECNIH3_09550  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ECNIH3_13755  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ECNIH3_09555  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ECNIH3_09145  hypothetical protein [KO:K01675] [EC:4.2.1.2]
ECNIH3_17910  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
ECNIH3_19705  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ECNIH3_14800  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ECNIH3_20440  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECNIH3_03785  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ECNIH3_03790  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
ECNIH3_11310  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecla00010  Glycolysis / Gluconeogenesis
ecla00053  Ascorbate and aldarate metabolism
ecla00061  Fatty acid biosynthesis
ecla00071  Fatty acid degradation
ecla00190  Oxidative phosphorylation
ecla00220  Arginine biosynthesis
ecla00250  Alanine, aspartate and glutamate metabolism
ecla00280  Valine, leucine and isoleucine degradation
ecla00350  Tyrosine metabolism
ecla00470  D-Amino acid metabolism
ecla00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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