KEGG   PATHWAY: eclg00020
Entry
eclg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter cloacae GGT036
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eclg00020  Citrate cycle (TCA cycle)
eclg00020

Module
eclg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eclg00020]
eclg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eclg00020]
eclg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eclg00020]
eclg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eclg00020]
eclg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eclg00020]
Other DBs
GO: 0006099
Organism
Enterobacter cloacae GGT036 [GN:eclg]
Gene
EC036_12500  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
EC036_24300  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
EC036_07500  aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EC036_16940  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EC036_12550  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
EC036_12560  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
EC036_07460  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EC036_12580  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
EC036_12570  malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EC036_12530  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EC036_12540  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EC036_12510  succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
EC036_12520  succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
EC036_03830  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
EC036_03820  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
EC036_03810  fumarate reductase subunit C [KO:K00246]
EC036_03800  fumarate reductase subunit D [KO:K00247]
EC036_18910  fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
EC036_28150  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EC036_18920  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EC036_18310  hypothetical protein [KO:K01675] [EC:4.2.1.2]
EC036_39950  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EC036_30680  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EC036_41350  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EC036_07440  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
EC036_07450  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
EC036_22990  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eclg00010  Glycolysis / Gluconeogenesis
eclg00053  Ascorbate and aldarate metabolism
eclg00061  Fatty acid biosynthesis
eclg00071  Fatty acid degradation
eclg00190  Oxidative phosphorylation
eclg00220  Arginine biosynthesis
eclg00250  Alanine, aspartate and glutamate metabolism
eclg00280  Valine, leucine and isoleucine degradation
eclg00350  Tyrosine metabolism
eclg00470  D-Amino acid metabolism
eclg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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