KEGG   PATHWAY: ecoc00020
Entry
ecoc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli K-12 C3026
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecoc00020  Citrate cycle (TCA cycle)
ecoc00020

Module
ecoc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecoc00020]
ecoc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecoc00020]
ecoc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecoc00020]
ecoc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecoc00020]
ecoc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecoc00020]
Other DBs
GO: 0006099
Organism
Escherichia coli K-12 C3026 [GN:ecoc]
Gene
C3026_03600  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
C3026_03910  hydratase [KO:K01681] [EC:4.2.1.3]
C3026_07495  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C3026_00495  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C3026_06830  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C3026_03635  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
C3026_03640  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
C3026_00485  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C3026_03650  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C3026_03645  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C3026_03620  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
C3026_03625  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C3026_03610  sdhC; succinate dehydrogenase [KO:K00241]
C3026_03615  sdhD; succinate dehydrogenase [KO:K00242]
C3026_22455  fumarate reductase [KO:K00244] [EC:1.3.5.1]
C3026_22450  fumarate reductase [KO:K00245] [EC:1.3.5.1]
C3026_22445  fumarate reductase [KO:K00246]
C3026_22440  fumarate reductase [KO:K00247]
C3026_09275  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C3026_22275  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C3026_09270  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C3026_09600  hypothetical protein [KO:K01675] [EC:4.2.1.2]
C3026_16045  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
C3026_17605  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C3026_12350  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C3026_18465  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
C3026_00475  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
C3026_00480  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
C3026_08050  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecoc00010  Glycolysis / Gluconeogenesis
ecoc00053  Ascorbate and aldarate metabolism
ecoc00061  Fatty acid biosynthesis
ecoc00071  Fatty acid degradation
ecoc00190  Oxidative phosphorylation
ecoc00220  Arginine biosynthesis
ecoc00250  Alanine, aspartate and glutamate metabolism
ecoc00280  Valine, leucine and isoleucine degradation
ecoc00350  Tyrosine metabolism
ecoc00470  D-Amino acid metabolism
ecoc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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