PATHWAY: ecoh02010 Help
Entry
Name
ABC transporters - Escherichia coli O145:H28 RM13516 (EHEC)
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Escherichia coli O145:H28 RM13516 (EHEC) [GN:
ecoh ]
Gene
ECRM13516_0975 ssuB; Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB [KO:K15555 ] [EC:7.6.2.14 ]
ECRM13516_0734 modA; Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA [KO:K02020 ]
ECRM13516_1371 potD; ABC transporter, periplasmic spermidine putrescine-binding protein PotD [KO:K11069 ]
ECRM13516_3384 proW; L-proline glycine betaine ABC transport system permease protein ProW [KO:K02001 ]
ECRM13516_4906 malE; Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE [KO:K10108 ]
ECRM13516_4907 malK; Maltose/maltodextrin transport ATP-binding protein MalK [KO:K10111 ] [EC:7.5.2.-]
ECRM13516_3230 yphF; putative sugar ABC transport system, periplasmic binding protein YphF precursor [KO:K23545 ]
ECRM13516_4598 rbsB; Ribose ABC transport system, periplasmic ribose-binding protein RbsB [KO:K10439 ]
ECRM13516_4969 rbsB_2; Ribose ABC transport system, periplasmic ribose-binding protein RbsB [KO:K10439 ]
ECRM13516_5121 ytfQ; Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor [KO:K23508 ]
ECRM13516_2853 mglB; Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB [KO:K10540 ]
ECRM13516_2851 mglC; Galactose/methyl galactoside ABC transport system, permease protein MglC [KO:K10541 ]
ECRM13516_4200 ugpB; Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein [KO:K05813 ]
ECRM13516_4574 pstS_2; Phosphate ABC transporter, periplasmic phosphate-binding protein PstS [KO:K02040 ]
ECRM13516_4988 phnD; Phosphonate ABC transporter phosphate-binding periplasmic component [KO:K02044 ]
ECRM13516_3010 hisJ; Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ [KO:K10014 ]
ECRM13516_0898 artJ; Arginine ABC transporter, periplasmic arginine-binding protein ArtJ [KO:K09996 ]
ECRM13516_0901 artI; Arginine ABC transporter, periplasmic arginine-binding protein ArtI [KO:K09997 ]
ECRM13516_4207 livK; High-affinity leucine-specific transport system, periplasmic binding protein LivK [KO:K01999 ]
ECRM13516_4212 livJ; Branched-chain amino acid ABC transporter, amino acid-binding protein [KO:K01999 ]
ECRM13516_4206 livH; High-affinity branched-chain amino acid transport system permease protein LivH [KO:K01997 ]
ECRM13516_1570 oppA; Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA [KO:K15580 ]
ECRM13516_4335 dppA; Dipeptide-binding ABC transporter, periplasmic substrate-binding component [KO:K12368 ]
ECRM13516_3706 fecB; Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB [KO:K23181 ]
ECRM13516_5060 fecB_2; Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB [KO:K23181 ]
ECRM13516_0162 fhuD; Ferric hydroxamate ABC transporter, periplasmic substrate binding protein FhuD [KO:K23227 ]
ECRM13516_3653 Transmembrane component of energizing module of queuosine-regulated ECF transporter [KO:K16785 ]
ECRM13516_3654 ATPase component of energizing module of queuosine-regulated ECF transporter [KO:K16786 ] [EC:7.-.-.-]
ECRM13516_3655 ATPase component of energizing module of queuosine-regulated ECF transporter [KO:K16787 ] [EC:7.-.-.-]
ECRM13516_1881 lsrB; Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB [KO:K10555 ]
ECRM13516_1879 lsrC; Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC [KO:K10556 ]
ECRM13516_1880 lsrD; Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD [KO:K10557 ]
ECRM13516_1878 Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component [KO:K10558 ]
ECRM13516_2903 ccmC; Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE [KO:K02195 ]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
KO pathway
LinkDB
All DBs