KEGG   PATHWAY: edh00020
Entry
edh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli DH1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
edh00020  Citrate cycle (TCA cycle)
edh00020

Module
edh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:edh00020]
edh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:edh00020]
edh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:edh00020]
edh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:edh00020]
edh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:edh00020]
Other DBs
GO: 0006099
Organism
Escherichia coli DH1 [GN:edh]
Gene
EcDH1_2916  citrate synthase I [KO:K01647] [EC:2.3.3.1]
EcDH1_2871  aconitate hydratase domain protein [KO:K01681] [EC:4.2.1.3]
EcDH1_2371  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
EcDH1_3484  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EcDH1_2511  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
EcDH1_2910  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
EcDH1_2909  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
EcDH1_3486  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EcDH1_2907  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
EcDH1_2908  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
EcDH1_2912  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EcDH1_2911  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
EcDH1_2914  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EcDH1_2913  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
EcDH1_3836  fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
EcDH1_3837  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
EcDH1_3838  fumarate reductase subunit C [KO:K00246]
EcDH1_3839  fumarate reductase D subunit [KO:K00247]
EcDH1_2031  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
EcDH1_3870  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
EcDH1_2032  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
EcDH1_1967  conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
EcDH1_0764  mannitol repressor, MtlR [KO:K01774] [EC:4.2.1.2]
EcDH1_0470  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
EcDH1_1448  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EcDH1_0310  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EcDH1_3488  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
EcDH1_3487  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
EcDH1_2268  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
edh00010  Glycolysis / Gluconeogenesis
edh00053  Ascorbate and aldarate metabolism
edh00061  Fatty acid biosynthesis
edh00071  Fatty acid degradation
edh00190  Oxidative phosphorylation
edh00220  Arginine biosynthesis
edh00250  Alanine, aspartate and glutamate metabolism
edh00280  Valine, leucine and isoleucine degradation
edh00350  Tyrosine metabolism
edh00470  D-Amino acid metabolism
edh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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