KEGG   PATHWAY: eec00020
Entry
eec00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter ludwigii EcWSU1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eec00020  Citrate cycle (TCA cycle)
eec00020

Module
eec_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eec00020]
eec_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eec00020]
eec_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eec00020]
eec_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eec00020]
eec_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eec00020]
Other DBs
GO: 0006099
Organism
Enterobacter ludwigii EcWSU1 [GN:eec]
Gene
EcWSU1_01268  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
EcWSU1_02505  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
EcWSU1_00735  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EcWSU1_01732  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
EcWSU1_01273  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EcWSU1_01274  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
EcWSU1_00732  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EcWSU1_01276  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
EcWSU1_01275  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
EcWSU1_01271  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EcWSU1_01272  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EcWSU1_01269  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
EcWSU1_01270  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
EcWSU1_00359  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
EcWSU1_00358  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
EcWSU1_00357  frdC; Fumarate reductase subunit C [KO:K00246]
EcWSU1_00356  frdD; Fumarate reductase subunit D [KO:K00247]
EcWSU1_01939  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
EcWSU1_02911  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
EcWSU1_01940  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
EcWSU1_01875  ydhZ; YdhZ [KO:K01675] [EC:4.2.1.2]
EcWSU1_04040  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EcWSU1_03109  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EcWSU1_04189  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
EcWSU1_00730  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
EcWSU1_00731  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
EcWSU1_02410  ydbK; putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eec00010  Glycolysis / Gluconeogenesis
eec00053  Ascorbate and aldarate metabolism
eec00061  Fatty acid biosynthesis
eec00071  Fatty acid degradation
eec00190  Oxidative phosphorylation
eec00220  Arginine biosynthesis
eec00250  Alanine, aspartate and glutamate metabolism
eec00280  Valine, leucine and isoleucine degradation
eec00350  Tyrosine metabolism
eec00470  D-Amino acid metabolism
eec00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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