Entry
Name
mRNA surveillance pathway - Eptesicus fuscus (big brown bat)
Description
The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.
Class
Genetic Information Processing; Translation
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Eptesicus fuscus (big brown bat) [GN:
efus ]
Gene
103286407 NCBP1; nuclear cap-binding protein subunit 1 isoform X1 [KO:K12882 ]
103303538 NCBP2; nuclear cap-binding protein subunit 2 isoform X2 [KO:K12883 ]
103288297 UPF3A; regulator of nonsense transcripts 3A isoform X1 [KO:K14328 ]
103299982 UPF3B; regulator of nonsense transcripts 3B isoform X1 [KO:K14328 ]
103301518 ACIN1; apoptotic chromatin condensation inducer in the nucleus isoform X1 [KO:K12875 ]
103290513 RNPS1; RNA-binding protein with serine-rich domain 1 isoform X2 [KO:K14325 ]
103302189 LOW QUALITY PROTEIN: nuclear RNA export factor 2-like [KO:K14284 ]
103291939 SRRM1; serine/arginine repetitive matrix protein 1 isoform X5 [KO:K13171 ]
103284753 PABPN1L; LOW QUALITY PROTEIN: embryonic polyadenylate-binding protein 2 [KO:K14396 ]
103295846 NUDT21; cleavage and polyadenylation specificity factor subunit 5 isoform X1 [KO:K14397 ]
103303321 CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X2 [KO:K14398 ]
103292571 CPSF6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 [KO:K14398 ]
103293644 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X2 [KO:K14400 ]
103302640 CPSF1; cleavage and polyadenylation specificity factor subunit 1 isoform X3 [KO:K14401 ]
103292245 CPSF2; cleavage and polyadenylation specificity factor subunit 2 isoform X1 [KO:K14402 ]
103305601 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [KO:K14403 ] [EC:3.1.27.-]
103285962 CPSF4; cleavage and polyadenylation specificity factor subunit 4 isoform X4 [KO:K14404 ]
103299437 CPSF4L; putative cleavage and polyadenylation specificity factor subunit 4-like protein [KO:K14404 ]
103284965 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 isoform X2 [KO:K14405 ]
103301212 WDR33; pre-mRNA 3' end processing protein WDR33 isoform X1 [KO:K15542 ]
103287049 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit isoform X2 [KO:K06269 ] [EC:3.1.3.16 ]
103297381 serine/threonine-protein phosphatase PP1-gamma catalytic subunit B-like isoform X2 [KO:K06269 ] [EC:3.1.3.16 ]
103301722 LOW QUALITY PROTEIN: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [KO:K15544 ] [EC:3.1.3.16 ]
103285765 CSTF1; cleavage stimulation factor subunit 1 isoform X1 [KO:K14406 ]
103296370 CSTF2T; cleavage stimulation factor subunit 2 tau variant [KO:K14407 ]
103291659 MSI2; RNA-binding protein Musashi homolog 2 isoform X2 [KO:K14411 ]
129148067 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like [KO:K13126 ]
103299738 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like [KO:K13126 ]
103289615 LOW QUALITY PROTEIN: eukaryotic peptide chain release factor subunit 1-like [KO:K03265 ]
103289916 ETF1; eukaryotic peptide chain release factor subunit 1 isoform X1 [KO:K03265 ]
103286107 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 [KO:K03267 ]
103301312 GSPT2; eukaryotic peptide chain release factor GTP-binding subunit ERF3B [KO:K03267 ]
103290018 SMG7; nonsense-mediated mRNA decay factor SMG7 isoform X3 [KO:K14409 ]
103291776 SMG6; telomerase-binding protein EST1A isoform X1 [KO:K11124 ] [EC:3.1.-.-]
103286718 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform isoform X1 [KO:K04382 ] [EC:3.1.3.16 ]
103290347 PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform isoform X1 [KO:K04382 ] [EC:3.1.3.16 ]
103293769 PPP2R1B; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1 [KO:K03456 ]
103304255 PPP2R1A; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [KO:K03456 ]
103285340 PPP2R2B; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 [KO:K04354 ]
103295052 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X2 [KO:K04354 ]
103288691 PPP2R2D; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform isoform X3 [KO:K04354 ]
103294548 PPP2R2C; protein phosphatase 2, regulatory subunit B, gamma [KO:K04354 ]
103301982 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X1 [KO:K11583 ]
103296345 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 [KO:K11583 ]
103304576 PPP2R3B; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta [KO:K11583 ]
103283666 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 [KO:K11584 ]
103290054 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform isoform X1 [KO:K11584 ]
103296652 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform [KO:K11584 ]
103298034 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X4 [KO:K11584 ]
103302063 PPP2R5B; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform isoform X1 [KO:K11584 ]
Reference
Authors
Maquat LE
Title
Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics.
Journal
Reference
Authors
Amrani N, Sachs MS, Jacobson A
Title
Early nonsense: mRNA decay solves a translational problem.
Journal
Reference
Authors
Eulalio A, Behm-Ansmant I, Izaurralde E
Title
P bodies: at the crossroads of post-transcriptional pathways.
Journal
Reference
Authors
Mandel CR, Bai Y, Tong L
Title
Protein factors in pre-mRNA 3'-end processing.
Journal
Reference
Authors
Clement SL, Lykke-Andersen J
Title
No mercy for messages that mess with the ribosome.
Journal
Related pathway
KO pathway
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