KEGG   PATHWAY: egi00020
Entry
egi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sinorhizobium garamanticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
egi00020  Citrate cycle (TCA cycle)
egi00020

Module
egi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:egi00020]
egi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:egi00020]
egi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:egi00020]
egi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:egi00020]
egi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:egi00020]
Other DBs
GO: 0006099
Organism
Sinorhizobium garamanticum [GN:egi]
Gene
PZN02_002686  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
PZN02_003608  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PZN02_001361  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PZN02_003312  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PZN02_001478  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PZN02_001479  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PZN02_001485  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZN02_001622  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZN02_003665  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZN02_001477  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PZN02_001476  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PZN02_001469  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PZN02_001471  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PZN02_001467  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PZN02_001468  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PZN02_003248  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PZN02_006131  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PZN02_001475  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PZN02_001311  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PZN02_001204  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PZN02_003670  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PZN02_003669  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PZN02_003668  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
egi00010  Glycolysis / Gluconeogenesis
egi00053  Ascorbate and aldarate metabolism
egi00061  Fatty acid biosynthesis
egi00071  Fatty acid degradation
egi00190  Oxidative phosphorylation
egi00220  Arginine biosynthesis
egi00250  Alanine, aspartate and glutamate metabolism
egi00280  Valine, leucine and isoleucine degradation
egi00350  Tyrosine metabolism
egi00470  D-Amino acid metabolism
egi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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