KEGG   PATHWAY: eho00020
Entry
eho00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Edwardsiella hoshinae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eho00020  Citrate cycle (TCA cycle)
eho00020

Module
eho_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eho00020]
eho_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eho00020]
eho_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eho00020]
eho_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eho00020]
eho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eho00020]
Other DBs
GO: 0006099
Organism
Edwardsiella hoshinae [GN:eho]
Gene
A9798_04360  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A9798_13205  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A9798_06700  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A9798_04385  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A9798_04390  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A9798_13215  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9798_16620  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9798_04400  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A9798_04395  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A9798_04375  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A9798_04380  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A9798_04365  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A9798_04370  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A9798_14995  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
A9798_15000  fumarate reductase [KO:K00245] [EC:1.3.5.1]
A9798_15005  fumarate reductase subunit C [KO:K00246]
A9798_15010  fumarate reductase [KO:K00247]
A9798_06420  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A9798_07295  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
A9798_14755  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A9798_01015  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A9798_13225  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A9798_13220  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
A9798_08410  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
A9798_04805  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eho00010  Glycolysis / Gluconeogenesis
eho00053  Ascorbate and aldarate metabolism
eho00061  Fatty acid biosynthesis
eho00071  Fatty acid degradation
eho00190  Oxidative phosphorylation
eho00220  Arginine biosynthesis
eho00250  Alanine, aspartate and glutamate metabolism
eho00280  Valine, leucine and isoleucine degradation
eho00350  Tyrosine metabolism
eho00470  D-Amino acid metabolism
eho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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