KEGG   PATHWAY: elh00020
Entry
elh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O78:H11:K80 H10407 (ETEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elh00020  Citrate cycle (TCA cycle)
elh00020

Module
elh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:elh00020]
elh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:elh00020]
elh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:elh00020]
elh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:elh00020]
elh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elh00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O78:H11:K80 H10407 (ETEC) [GN:elh]
Gene
ETEC_0731  citrate synthase [KO:K01647] [EC:2.3.3.1]
ETEC_0778  putative aconitase [KO:K01681] [EC:4.2.1.3]
ETEC_1380  aconitate hydratase 1 (citrate hydro-lyase 1) [KO:K01681] [EC:4.2.1.3]
ETEC_0114  aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ETEC_1260  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ETEC_0736  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ETEC_0737  dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
ETEC_0112  dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenase complexes) [KO:K00382] [EC:1.8.1.4]
ETEC_0739  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
ETEC_0738  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
ETEC_0734  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ETEC_0735  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
ETEC_0732  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
ETEC_0733  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
ETEC_4503  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ETEC_4502  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
ETEC_4501  fumarate reductase subunit C [KO:K00246]
ETEC_4500  fumarate reductase subunit D [KO:K00247]
ETEC_4432  fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
ETEC_1646  fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
ETEC_1645  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ETEC_1708  conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
ETEC_3122  putative transcriptional regulator [KO:K01774] [EC:4.2.1.2]
ETEC_3497  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ETEC_2344  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ETEC_3653  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
ETEC_0110  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ETEC_0111  dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
ETEC_1452  probable pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elh00010  Glycolysis / Gluconeogenesis
elh00053  Ascorbate and aldarate metabolism
elh00061  Fatty acid biosynthesis
elh00071  Fatty acid degradation
elh00190  Oxidative phosphorylation
elh00220  Arginine biosynthesis
elh00250  Alanine, aspartate and glutamate metabolism
elh00280  Valine, leucine and isoleucine degradation
elh00350  Tyrosine metabolism
elh00470  D-Amino acid metabolism
elh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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