KEGG   PATHWAY: ell00020
Entry
ell00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli W
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ell00020  Citrate cycle (TCA cycle)
ell00020

Module
ell_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ell00020]
ell_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ell00020]
ell_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ell00020]
ell_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ell00020]
ell_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ell00020]
Other DBs
GO: 0006099
Organism
Escherichia coli W [GN:ell]
Gene
WFL_03780  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
WFL_06675  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
WFL_04005  ybhJ; putative hydratase [KO:K01681] [EC:4.2.1.3]
WFL_00565  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
WFL_06080  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
WFL_03805  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
WFL_03810  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
WFL_00555  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WFL_03820  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
WFL_03815  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
WFL_03795  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
WFL_03800  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
WFL_03785  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
WFL_03790  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
WFL_21985  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
WFL_21980  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
WFL_21975  frdC; fumarate reductase subunit C [KO:K00246]
WFL_21970  frdD; fumarate reductase subunit D [KO:K00247]
WFL_21805  fumB; fumarate hydratase FumB [KO:K01676] [EC:4.2.1.2]
WFL_08705  fumA; fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
WFL_08700  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
WFL_09025  hypothetical protein [KO:K01675] [EC:4.2.1.2]
WFL_15570  yggD; putative DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
WFL_17135  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WFL_11800  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
WFL_17870  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
WFL_00545  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
WFL_00550  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
WFL_07380  hypothetical protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ell00010  Glycolysis / Gluconeogenesis
ell00053  Ascorbate and aldarate metabolism
ell00061  Fatty acid biosynthesis
ell00071  Fatty acid degradation
ell00190  Oxidative phosphorylation
ell00220  Arginine biosynthesis
ell00250  Alanine, aspartate and glutamate metabolism
ell00280  Valine, leucine and isoleucine degradation
ell00350  Tyrosine metabolism
ell00470  D-Amino acid metabolism
ell00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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