KEGG   PATHWAY: enb00020
Entry
enb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter sp. N18-03635
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
enb00020  Citrate cycle (TCA cycle)
enb00020

Module
enb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:enb00020]
enb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:enb00020]
enb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:enb00020]
enb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:enb00020]
enb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:enb00020]
Other DBs
GO: 0006099
Organism
Enterobacter sp. N18-03635 [GN:enb]
Gene
ELK40_06915  citrate synthase [KO:K01647] [EC:2.3.3.1]
ELK40_12955  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
ELK40_04455  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ELK40_09155  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ELK40_06940  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ELK40_06945  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
ELK40_04440  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ELK40_06955  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ELK40_06950  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ELK40_06930  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ELK40_06935  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ELK40_06920  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
ELK40_06925  succinate dehydrogenase membrane anchor subunit [KO:K00242]
ELK40_02730  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ELK40_02725  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
ELK40_02720  frdC; fumarate reductase subunit FrdC [KO:K00246]
ELK40_02715  frdD; fumarate reductase subunit FrdD [KO:K00247]
ELK40_10080  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ELK40_14560  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ELK40_10085  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ELK40_09765  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
ELK40_20295  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ELK40_15640  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
ELK40_21005  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ELK40_04430  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
ELK40_04435  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
ELK40_12210  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
enb00010  Glycolysis / Gluconeogenesis
enb00053  Ascorbate and aldarate metabolism
enb00061  Fatty acid biosynthesis
enb00071  Fatty acid degradation
enb00190  Oxidative phosphorylation
enb00220  Arginine biosynthesis
enb00250  Alanine, aspartate and glutamate metabolism
enb00280  Valine, leucine and isoleucine degradation
enb00350  Tyrosine metabolism
enb00470  D-Amino acid metabolism
enb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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