KEGG   PATHWAY: enk00020
Entry
enk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter sp. AN-K1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
enk00020  Citrate cycle (TCA cycle)
enk00020

Module
enk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:enk00020]
enk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:enk00020]
enk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:enk00020]
enk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:enk00020]
enk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:enk00020]
Other DBs
GO: 0006099
Organism
Enterobacter sp. AN-K1 [GN:enk]
Gene
LOC22_17115  citrate synthase [KO:K01647] [EC:2.3.3.1]
LOC22_00345  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LOC22_14620  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LOC22_19195  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LOC22_17140  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LOC22_17145  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LOC22_14605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LOC22_17155  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LOC22_17150  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LOC22_17130  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LOC22_17135  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
LOC22_17120  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
LOC22_17125  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
LOC22_12840  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
LOC22_12835  frdB; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
LOC22_12830  frdC; fumarate reductase subunit FrdC [KO:K00246]
LOC22_12825  frdD; fumarate reductase subunit FrdD [KO:K00247]
LOC22_20170  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LOC22_02210  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LOC22_20175  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LOC22_19850  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
LOC22_08295  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LOC22_03230  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LOC22_09015  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LOC22_14595  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LOC22_14600  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
LOC22_00050  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
enk00010  Glycolysis / Gluconeogenesis
enk00053  Ascorbate and aldarate metabolism
enk00061  Fatty acid biosynthesis
enk00071  Fatty acid degradation
enk00190  Oxidative phosphorylation
enk00220  Arginine biosynthesis
enk00250  Alanine, aspartate and glutamate metabolism
enk00280  Valine, leucine and isoleucine degradation
enk00350  Tyrosine metabolism
enk00470  D-Amino acid metabolism
enk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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