KEGG   PATHWAY: enl00020
Entry
enl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter cloacae subsp. dissolvens SDM
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
enl00020  Citrate cycle (TCA cycle)
enl00020

Module
enl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:enl00020]
enl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:enl00020]
enl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:enl00020]
enl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:enl00020]
enl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:enl00020]
Other DBs
GO: 0006099
Organism
Enterobacter cloacae subsp. dissolvens SDM [GN:enl]
Gene
A3UG_06490  citrate synthase I [KO:K01647] [EC:2.3.3.1]
A3UG_12810  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A3UG_03820  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A3UG_08750  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A3UG_06515  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A3UG_06520  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A3UG_03805  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A3UG_06530  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
A3UG_06525  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
A3UG_06505  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A3UG_06510  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A3UG_06495  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
A3UG_06500  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
A3UG_02030  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
A3UG_02025  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
A3UG_02020  fumarate reductase subunit C [KO:K00246]
A3UG_02015  fumarate reductase subunit D [KO:K00247]
A3UG_09770  fumarase [KO:K01676] [EC:4.2.1.2]
A3UG_14545  fumarate hydratase FumB [KO:K01676] [EC:4.2.1.2]
A3UG_09775  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A3UG_09470  hypothetical protein [KO:K01675] [EC:4.2.1.2]
A3UG_20465  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A3UG_15795  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A3UG_21190  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
A3UG_03795  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
A3UG_03800  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
A3UG_12140  pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
enl00010  Glycolysis / Gluconeogenesis
enl00053  Ascorbate and aldarate metabolism
enl00061  Fatty acid biosynthesis
enl00071  Fatty acid degradation
enl00190  Oxidative phosphorylation
enl00220  Arginine biosynthesis
enl00250  Alanine, aspartate and glutamate metabolism
enl00280  Valine, leucine and isoleucine degradation
enl00350  Tyrosine metabolism
enl00470  D-Amino acid metabolism
enl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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