KEGG   PATHWAY: eno00020
Entry
eno00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter kobei ENHKU01
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eno00020  Citrate cycle (TCA cycle)
eno00020

Module
eno_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eno00020]
eno_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eno00020]
eno_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eno00020]
eno_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eno00020]
eno_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eno00020]
Other DBs
GO: 0006099
Organism
Enterobacter kobei ENHKU01 [GN:eno]
Gene
ECENHK_06590  citrate synthase [KO:K01647] [EC:2.3.3.1]
ECENHK_12365  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ECENHK_04005  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECENHK_08795  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ECENHK_06615  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ECENHK_06620  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ECENHK_03980  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECENHK_06630  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ECENHK_06625  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ECENHK_06605  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECENHK_06610  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ECENHK_06595  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
ECENHK_06600  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
ECENHK_02005  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ECENHK_02000  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
ECENHK_01995  Fumarate reductase subunit C [KO:K00246]
ECENHK_01990  fumarate reductase subunit D [KO:K00247]
ECENHK_09730  fumarase [KO:K01676] [EC:4.2.1.2]
ECENHK_14245  fumarate hydratase FumB [KO:K01676] [EC:4.2.1.2]
ECENHK_09735  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ECENHK_09460  hypothetical protein [KO:K01675] [EC:4.2.1.2]
ECENHK_19890  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ECENHK_15225  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ECENHK_20700  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECENHK_03970  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
ECENHK_03975  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
ECENHK_11755  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eno00010  Glycolysis / Gluconeogenesis
eno00053  Ascorbate and aldarate metabolism
eno00061  Fatty acid biosynthesis
eno00071  Fatty acid degradation
eno00190  Oxidative phosphorylation
eno00220  Arginine biosynthesis
eno00250  Alanine, aspartate and glutamate metabolism
eno00280  Valine, leucine and isoleucine degradation
eno00350  Tyrosine metabolism
eno00470  D-Amino acid metabolism
eno00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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