KEGG   PATHWAY: eoc00020
Entry
eoc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O7:K1 CE10
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eoc00020  Citrate cycle (TCA cycle)
eoc00020

Module
eoc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eoc00020]
eoc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eoc00020]
eoc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eoc00020]
eoc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eoc00020]
eoc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eoc00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O7:K1 CE10 [GN:eoc]
Gene
CE10_0708  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CE10_1518  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CE10_0774  ybhJ; hypothetical protein [KO:K01681] [EC:4.2.1.3]
CE10_0118  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CE10_1241  icdA; e14 prophage, isocitrate dehydrogenase, specific for NADP+ [KO:K00031] [EC:1.1.1.42]
CE10_0713  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
CE10_0714  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
CE10_0116  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
CE10_0716  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
CE10_0715  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
CE10_0711  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CE10_0712  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
CE10_0709  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
CE10_0710  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
CE10_4895  frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CE10_4894  frdB; fumarate reductase (anaerobic), Fe-S subunit [KO:K00245] [EC:1.3.5.1]
CE10_4893  frdC; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00246]
CE10_4892  frdD; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00247]
CE10_1884  fumA; fumarate hydratase (fumarase A), aerobic Class I [KO:K01676] [EC:4.2.1.2]
CE10_0726  fumarase [KO:K01676] [EC:4.2.1.2]
CE10_4838  fumB; anaerobic class I fumarate hydratase (fumarase B) [KO:K01676] [EC:4.2.1.2]
CE10_1883  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
CE10_1949  ydhZ; hypothetical protein [KO:K01675] [EC:4.2.1.2]
CE10_3370  yggD; putative DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
CE10_3763  mdh; malate dehydrogenase, NAD(P)-binding protein [KO:K00024] [EC:1.1.1.37]
CE10_2584  mqo; malate dehydrogenase, FAD/NAD(P)-binding domain protein [KO:K00116] [EC:1.1.5.4]
CE10_3921  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CE10_0114  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding protein [KO:K00163] [EC:1.2.4.1]
CE10_1592  ydbK; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eoc00010  Glycolysis / Gluconeogenesis
eoc00053  Ascorbate and aldarate metabolism
eoc00061  Fatty acid biosynthesis
eoc00071  Fatty acid degradation
eoc00190  Oxidative phosphorylation
eoc00220  Arginine biosynthesis
eoc00250  Alanine, aspartate and glutamate metabolism
eoc00280  Valine, leucine and isoleucine degradation
eoc00350  Tyrosine metabolism
eoc00470  D-Amino acid metabolism
eoc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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