KEGG   PATHWAY: ept00020
Entry
ept00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter pasteurii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ept00020  Citrate cycle (TCA cycle)
ept00020

Module
ept_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ept00020]
ept_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ept00020]
ept_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ept00020]
ept_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ept00020]
ept_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ept00020]
Other DBs
GO: 0006099
Organism
Enterobacter pasteurii [GN:ept]
Gene
HWQ17_06265  citrate synthase [KO:K01647] [EC:2.3.3.1]
HWQ17_00685  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HWQ17_08755  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HWQ17_03990  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HWQ17_06240  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HWQ17_06235  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HWQ17_08770  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HWQ17_06225  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HWQ17_06230  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HWQ17_06250  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HWQ17_06245  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
HWQ17_06260  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
HWQ17_06255  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
HWQ17_10515  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
HWQ17_10520  frdB; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
HWQ17_10525  frdC; fumarate reductase subunit FrdC [KO:K00246]
HWQ17_10530  frdD; fumarate reductase subunit FrdD [KO:K00247]
HWQ17_02985  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HWQ17_21600  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HWQ17_02980  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HWQ17_03305  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
HWQ17_15830  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HWQ17_20640  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HWQ17_15020  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HWQ17_08780  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HWQ17_08775  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
HWQ17_01190  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ept00010  Glycolysis / Gluconeogenesis
ept00053  Ascorbate and aldarate metabolism
ept00061  Fatty acid biosynthesis
ept00071  Fatty acid degradation
ept00190  Oxidative phosphorylation
ept00220  Arginine biosynthesis
ept00250  Alanine, aspartate and glutamate metabolism
ept00280  Valine, leucine and isoleucine degradation
ept00350  Tyrosine metabolism
ept00470  D-Amino acid metabolism
ept00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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