KEGG   PATHWAY: erc03008
Entry
erc03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Eremothecium cymbalariae
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
erc03008  Ribosome biogenesis in eukaryotes
erc03008

Organism
Eremothecium cymbalariae [GN:erc]
Gene
Ecym_5497  hypothetical protein [KO:K03115]
Ecym_7224  hypothetical protein [KO:K03115]
Ecym_4056  hypothetical protein [KO:K03097] [EC:2.7.11.1]
Ecym_4364  hypothetical protein [KO:K03097] [EC:2.7.11.1]
Ecym_4452  hypothetical protein [KO:K14544]
Ecym_1049  hypothetical protein [KO:K14545]
Ecym_4544  hypothetical protein [KO:K14546]
Ecym_7403  hypothetical protein [KO:K14549]
Ecym_6361  hypothetical protein [KO:K14550]
Ecym_5160  hypothetical protein [KO:K14551]
Ecym_8312  Hypothetical protein [KO:K14552]
Ecym_6275  hypothetical protein [KO:K14553]
Ecym_3243  Hypothetical protein [KO:K14554]
Ecym_4134  hypothetical protein [KO:K14555]
Ecym_4255  hypothetical protein [KO:K14556]
Ecym_4100  hypothetical protein [KO:K14557]
Ecym_2093  Hypothetical protein [KO:K14558]
Ecym_8271  Hypothetical protein [KO:K14559]
Ecym_2071  Hypothetical protein [KO:K14560]
Ecym_5387  hypothetical protein [KO:K14561]
Ecym_5260  hypothetical protein [KO:K14563] [EC:2.1.1.-]
Ecym_4719  hypothetical protein [KO:K14564]
Ecym_1489  hypothetical protein [KO:K14565]
Ecym_1375  hypothetical protein [KO:K12845]
Ecym_1291  hypothetical protein [KO:K11131] [EC:5.4.99.-]
Ecym_5114  hypothetical protein [KO:K11129]
Ecym_8018  Hypothetical protein [KO:K11128]
Ecym_8179  Hypothetical protein [KO:K11130]
Ecym_7469  hypothetical protein [KO:K14566]
Ecym_8152  Hypothetical protein [KO:K14567]
Ecym_1482  hypothetical protein [KO:K03685] [EC:3.1.26.3]
Ecym_1069  hypothetical protein [KO:K14568] [EC:2.1.1.260]
Ecym_8188  Hypothetical protein [KO:K14521] [EC:2.3.1.-]
Ecym_3043  Hypothetical protein [KO:K11108]
Ecym_6470  hypothetical protein [KO:K01164] [EC:3.1.26.5]
Ecym_3599  Hypothetical protein [KO:K14522] [EC:3.1.26.5]
Ecym_2329  Hypothetical protein [KO:K03538] [EC:3.1.26.5]
Ecym_5058  hypothetical protein [KO:K03537] [EC:3.1.26.5]
Ecym_6160  hypothetical protein [KO:K14524] [EC:3.1.26.5]
Ecym_7087  hypothetical protein [KO:K14526] [EC:3.1.26.5]
Ecym_6194  hypothetical protein [KO:K14528] [EC:3.1.26.5]
Ecym_3212  Hypothetical protein [KO:K03539] [EC:3.1.26.5]
Ecym_5586  hypothetical protein [KO:K14531]
Ecym_4219  hypothetical protein [KO:K14532]
Ecym_5646  hypothetical protein [KO:K14570] [EC:3.1.-.-]
Ecym_4272  hypothetical protein [KO:K14570] [EC:3.1.-.-]
Ecym_1507  hypothetical protein [KO:K13288] [EC:3.1.-.-]
Ecym_8383  Hypothetical protein [KO:K12618] [EC:3.1.13.-]
Ecym_5486  hypothetical protein [KO:K12619] [EC:3.1.13.-]
Ecym_7064  hypothetical protein [KO:K06943]
Ecym_4476  hypothetical protein [KO:K14538]
Ecym_6218  hypothetical protein [KO:K14571]
Ecym_4273  hypothetical protein [KO:K14572]
Ecym_2541  Hypothetical protein [KO:K14573]
Ecym_5477  hypothetical protein [KO:K11883]
Ecym_2202  Hypothetical protein [KO:K14758] [EC:2.7.11.1]
Ecym_3097  Hypothetical protein [KO:K07936]
Ecym_2068  Hypothetical protein [KO:K14290]
Ecym_5097  hypothetical protein [KO:K07562]
Ecym_2373  Hypothetical protein [KO:K14284]
Ecym_3235  Hypothetical protein [KO:K14543]
Ecym_8364  Hypothetical protein [KO:K03264]
Ecym_7108  hypothetical protein [KO:K14574]
Ecym_6404  hypothetical protein [KO:K14536] [EC:3.6.5.-]
Ecym_2254  Hypothetical protein [KO:K14539] [EC:3.6.1.-]
Ecym_3259  Hypothetical protein [KO:K14575]
Ecym_4725  hypothetical protein [KO:K18532] [EC:2.7.4.3]
Ecym_4763  hypothetical protein [KO:K07178] [EC:2.7.11.1]
Ecym_6449  hypothetical protein [KO:K07179] [EC:2.7.11.1]
Ecym_4195  18S ribosomal RNA [KO:K01979]
Ecym_4199  18S ribosomal RNA [KO:K01979]
Ecym_4196  5.8S ribosomal RNA [KO:K01986]
Ecym_4200  5.8S ribosomal RNA [KO:K01986]
Ecym_4197  25S ribosomal RNA [KO:K01982]
Ecym_4201  25S ribosomal RNA [KO:K01982]
Ecym_4198  5S ribosomal RNA [KO:K01981]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
erc03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system