KEGG   PATHWAY: erj00020
Entry
erj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Erwinia sp. Ejp617
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
erj00020  Citrate cycle (TCA cycle)
erj00020

Module
erj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:erj00020]
erj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:erj00020]
erj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:erj00020]
erj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:erj00020]
erj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:erj00020]
Other DBs
GO: 0006099
Organism
Erwinia sp. Ejp617 [GN:erj]
Gene
EJP617_22860  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
EJP617_30090  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EJP617_02760  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EJP617_26360  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EJP617_22910  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EJP617_22920  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
EJP617_03050  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJP617_22940  sucD; Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
EJP617_22930  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
EJP617_22890  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EJP617_22900  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EJP617_22870  sdhC; Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
EJP617_22880  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
EJP617_27080  fumA; Fumarase A [KO:K01676] [EC:4.2.1.2]
EJP617_28690  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
EJP617_14710  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EJP617_12870  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EJP617_29160  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EJP617_09220  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EJP617_03070  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
EJP617_03060  aceF; Probable pyruvate dehydrogenase multienzyme complex, dihydrolipoamide acetyltransferase component(E2) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
erj00010  Glycolysis / Gluconeogenesis
erj00053  Ascorbate and aldarate metabolism
erj00061  Fatty acid biosynthesis
erj00071  Fatty acid degradation
erj00190  Oxidative phosphorylation
erj00220  Arginine biosynthesis
erj00250  Alanine, aspartate and glutamate metabolism
erj00280  Valine, leucine and isoleucine degradation
erj00350  Tyrosine metabolism
erj00470  D-Amino acid metabolism
erj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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