KEGG   PATHWAY: eruy00020
Entry
eruy00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia ruysiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eruy00020  Citrate cycle (TCA cycle)
eruy00020

Module
eruy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eruy00020]
eruy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eruy00020]
eruy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eruy00020]
eruy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eruy00020]
eruy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eruy00020]
Other DBs
GO: 0006099
Organism
Escherichia ruysiae [GN:eruy]
Gene
OSH18_06110  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
OSH18_01700  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
OSH18_05860  hydratase [KO:K01681] [EC:4.2.1.3]
OSH18_09040  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
OSH18_04085  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OSH18_06080  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
OSH18_06075  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
OSH18_09050  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OSH18_06065  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OSH18_06070  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OSH18_06090  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OSH18_06085  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
OSH18_06100  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
OSH18_06095  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
OSH18_15120  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
OSH18_15115  frdB; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
OSH18_15110  frdC; fumarate reductase subunit FrdC [KO:K00246]
OSH18_15105  frdD; fumarate reductase subunit FrdD [KO:K00247]
OSH18_14980  fumB; class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
OSH18_02775  fumB; class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
OSH18_02770  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OSH18_03100  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
OSH18_17130  fumE; fumarase E [KO:K01774] [EC:4.2.1.2]
OSH18_10290  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OSH18_20240  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
OSH18_11170  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
OSH18_09060  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
OSH18_09055  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
OSH18_02030  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eruy00010  Glycolysis / Gluconeogenesis
eruy00053  Ascorbate and aldarate metabolism
eruy00061  Fatty acid biosynthesis
eruy00071  Fatty acid degradation
eruy00190  Oxidative phosphorylation
eruy00220  Arginine biosynthesis
eruy00250  Alanine, aspartate and glutamate metabolism
eruy00280  Valine, leucine and isoleucine degradation
eruy00350  Tyrosine metabolism
eruy00470  D-Amino acid metabolism
eruy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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