KEGG   PATHWAY: erwi00020
Entry
erwi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Erwinia sorbitola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
erwi00020  Citrate cycle (TCA cycle)
erwi00020

Module
erwi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:erwi00020]
erwi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:erwi00020]
erwi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:erwi00020]
erwi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:erwi00020]
erwi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:erwi00020]
Other DBs
GO: 0006099
Organism
Erwinia sorbitola [GN:erwi]
Gene
GN242_14645  citrate synthase [KO:K01647] [EC:2.3.3.1]
GN242_10715  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GN242_17395  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GN242_08365  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GN242_14620  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GN242_14615  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GN242_17460  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GN242_14605  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GN242_14610  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GN242_14630  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GN242_14625  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GN242_14640  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
GN242_14635  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
GN242_18825  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
GN242_18830  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
GN242_18835  frdC; fumarate reductase subunit FrdC [KO:K00246]
GN242_18840  frdD; fumarate reductase subunit FrdD [KO:K00247]
GN242_08550  class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GN242_09490  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GN242_02185  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GN242_20510  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
GN242_10375  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
GN242_01500  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GN242_17470  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
GN242_17465  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
erwi00010  Glycolysis / Gluconeogenesis
erwi00053  Ascorbate and aldarate metabolism
erwi00061  Fatty acid biosynthesis
erwi00071  Fatty acid degradation
erwi00190  Oxidative phosphorylation
erwi00220  Arginine biosynthesis
erwi00250  Alanine, aspartate and glutamate metabolism
erwi00280  Valine, leucine and isoleucine degradation
erwi00350  Tyrosine metabolism
erwi00470  D-Amino acid metabolism
erwi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system