KEGG   PATHWAY: esz00020
Entry
esz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia sp. E4742
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
esz00020  Citrate cycle (TCA cycle)
esz00020

Module
esz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:esz00020]
esz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:esz00020]
esz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:esz00020]
esz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:esz00020]
esz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:esz00020]
Other DBs
GO: 0006099
Organism
Escherichia sp. E4742 [GN:esz]
Gene
FEM44_18005  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FEM44_21440  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FEM44_18360  hydratase [KO:K01681] [EC:4.2.1.3]
FEM44_15065  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FEM44_20830  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FEM44_18035  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FEM44_18040  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FEM44_15055  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FEM44_18050  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FEM44_18045  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FEM44_18025  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FEM44_18030  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FEM44_18015  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
FEM44_18020  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
FEM44_13435  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
FEM44_13430  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
FEM44_13425  frdC; fumarate reductase subunit FrdC [KO:K00246]
FEM44_13420  frdD; fumarate reductase subunit FrdD [KO:K00247]
FEM44_12435  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FEM44_22985  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FEM44_18095  class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FEM44_22980  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FEM44_23310  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
FEM44_04545  fumE; fumarase E [KO:K01774] [EC:4.2.1.2]
FEM44_07180  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FEM44_01280  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FEM44_07965  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FEM44_15045  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FEM44_15050  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
FEM44_22120  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
esz00010  Glycolysis / Gluconeogenesis
esz00053  Ascorbate and aldarate metabolism
esz00061  Fatty acid biosynthesis
esz00071  Fatty acid degradation
esz00190  Oxidative phosphorylation
esz00220  Arginine biosynthesis
esz00250  Alanine, aspartate and glutamate metabolism
esz00280  Valine, leucine and isoleucine degradation
esz00350  Tyrosine metabolism
esz00470  D-Amino acid metabolism
esz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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