KEGG   PATHWAY: fad00020
Entry
fad00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella adeliensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fad00020  Citrate cycle (TCA cycle)
fad00020

Module
fad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fad00020]
fad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fad00020]
fad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fad00020]
fad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fad00020]
fad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fad00020]
Other DBs
GO: 0006099
Organism
Francisella adeliensis [GN:fad]
Gene
CDH04_09020  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CDH04_00290  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CDH04_02650  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CDH04_08995  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CDH04_08990  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CDH04_02515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDH04_03675  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CDH04_03680  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CDH04_09005  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CDH04_09000  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CDH04_09015  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CDH04_09010  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CDH04_08195  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CDH04_00165  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CDH04_05670  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CDH04_07495  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CDH04_02505  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CDH04_02510  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fad00010  Glycolysis / Gluconeogenesis
fad00053  Ascorbate and aldarate metabolism
fad00061  Fatty acid biosynthesis
fad00071  Fatty acid degradation
fad00190  Oxidative phosphorylation
fad00220  Arginine biosynthesis
fad00250  Alanine, aspartate and glutamate metabolism
fad00280  Valine, leucine and isoleucine degradation
fad00350  Tyrosine metabolism
fad00470  D-Amino acid metabolism
fad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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