KEGG   PATHWAY: fcl00020
Entry
fcl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Frederiksenia canicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fcl00020  Citrate cycle (TCA cycle)
fcl00020

Module
fcl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fcl00020]
fcl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fcl00020]
fcl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fcl00020]
fcl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fcl00020]
fcl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fcl00020]
Other DBs
GO: 0006099
Organism
Frederiksenia canicola [GN:fcl]
Gene
A4G17_07480  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A4G17_07475  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A4G17_07470  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A4G17_08855  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A4G17_08860  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A4G17_08125  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A4G17_08870  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A4G17_08865  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A4G17_03450  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
A4G17_03455  fumarate reductase [KO:K00245] [EC:1.3.5.1]
A4G17_03460  fumarate reductase subunit C [KO:K00246]
A4G17_03465  fumarate reductase [KO:K00247]
A4G17_01790  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
A4G17_09565  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A4G17_08565  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A4G17_08135  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A4G17_08130  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fcl00010  Glycolysis / Gluconeogenesis
fcl00053  Ascorbate and aldarate metabolism
fcl00061  Fatty acid biosynthesis
fcl00071  Fatty acid degradation
fcl00190  Oxidative phosphorylation
fcl00220  Arginine biosynthesis
fcl00250  Alanine, aspartate and glutamate metabolism
fcl00280  Valine, leucine and isoleucine degradation
fcl00350  Tyrosine metabolism
fcl00470  D-Amino acid metabolism
fcl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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