KEGG   PATHWAY: fhi00020
Entry
fhi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella hispaniensis FSC454
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fhi00020  Citrate cycle (TCA cycle)
fhi00020

Module
fhi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fhi00020]
fhi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fhi00020]
fhi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fhi00020]
fhi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fhi00020]
fhi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fhi00020]
Other DBs
GO: 0006099
Organism
Francisella hispaniensis FSC454 [GN:fhi]
Gene
FSC454_08455  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FSC454_08370  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
FSC454_07400  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
FSC454_08430  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FSC454_08425  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
FSC454_07665  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FSC454_02650  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FSC454_02655  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FSC454_08440  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FSC454_08435  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FSC454_08450  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FSC454_08445  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FSC454_01560  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FSC454_01030  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
FSC454_04890  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FSC454_03940  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FSC454_07675  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FSC454_07670  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fhi00010  Glycolysis / Gluconeogenesis
fhi00053  Ascorbate and aldarate metabolism
fhi00061  Fatty acid biosynthesis
fhi00071  Fatty acid degradation
fhi00190  Oxidative phosphorylation
fhi00220  Arginine biosynthesis
fhi00250  Alanine, aspartate and glutamate metabolism
fhi00280  Valine, leucine and isoleucine degradation
fhi00350  Tyrosine metabolism
fhi00470  D-Amino acid metabolism
fhi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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