KEGG   PATHWAY: fku00020
Entry
fku00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ferrigenium kumadai
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fku00020  Citrate cycle (TCA cycle)
fku00020

Module
fku_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fku00020]
fku_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fku00020]
fku_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fku00020]
fku_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fku00020]
Other DBs
GO: 0006099
Organism
Ferrigenium kumadai [GN:fku]
Gene
FGKAn22_13560  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
FGKAn22_23030  hypothetical protein [KO:K01647] [EC:2.3.3.1]
FGKAn22_10070  rpfA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FGKAn22_05400  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
FGKAn22_13550  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
FGKAn22_13530  odhB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
FGKAn22_20130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FGKAn22_13650  pyruvate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FGKAn22_13660  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FGKAn22_17410  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
FGKAn22_17420  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
FGKAn22_13590  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FGKAn22_13580  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FGKAn22_13610  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FGKAn22_13600  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FGKAn22_10060  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
FGKAn22_13640  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FGKAn22_22300  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
FGKAn22_22290  pdhB; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
FGKAn22_11190  porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
FGKAn22_11200  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
FGKAn22_11180  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
FGKAn22_01720  hypothetical protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fku00010  Glycolysis / Gluconeogenesis
fku00053  Ascorbate and aldarate metabolism
fku00061  Fatty acid biosynthesis
fku00071  Fatty acid degradation
fku00190  Oxidative phosphorylation
fku00220  Arginine biosynthesis
fku00250  Alanine, aspartate and glutamate metabolism
fku00280  Valine, leucine and isoleucine degradation
fku00350  Tyrosine metabolism
fku00470  D-Amino acid metabolism
fku00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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