KEGG   PATHWAY: fnn00020
Entry
fnn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella noatunensis subsp. noatunensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fnn00020  Citrate cycle (TCA cycle)
fnn00020

Module
fnn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fnn00020]
fnn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fnn00020]
fnn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fnn00020]
fnn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fnn00020]
fnn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fnn00020]
Other DBs
GO: 0006099
Organism
Francisella noatunensis subsp. noatunensis [GN:fnn]
Gene
FSC774_00570  citrate synthase [KO:K01647] [EC:2.3.3.1]
FSC774_00655  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FSC774_06010  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FSC774_00595  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FSC774_00600  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FSC774_03270  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FSC774_02820  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FSC774_02825  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FSC774_00585  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FSC774_00590  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FSC774_00575  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FSC774_00580  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FSC774_08880  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FSC774_02195  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FSC774_07075  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FSC774_03260  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FSC774_03265  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fnn00010  Glycolysis / Gluconeogenesis
fnn00061  Fatty acid biosynthesis
fnn00071  Fatty acid degradation
fnn00190  Oxidative phosphorylation
fnn00220  Arginine biosynthesis
fnn00250  Alanine, aspartate and glutamate metabolism
fnn00280  Valine, leucine and isoleucine degradation
fnn00350  Tyrosine metabolism
fnn00470  D-Amino acid metabolism
fnn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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