KEGG   PATHWAY: fper00020
Entry
fper00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella persica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fper00020  Citrate cycle (TCA cycle)
fper00020

Module
fper_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fper00020]
fper_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fper00020]
fper_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fper00020]
fper_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fper00020]
fper_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fper00020]
Other DBs
GO: 0006099
Organism
Francisella persica [GN:fper]
Gene
ACH24_06705  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ACH24_00010  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ACH24_00740  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ACH24_06730  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
ACH24_06735  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
ACH24_00555  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACH24_01835  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ACH24_01840  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ACH24_06720  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
ACH24_06725  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ACH24_06710  succinate dehydrogenase [KO:K00241]
ACH24_06715  succinate dehydrogenase [KO:K00242]
ACH24_04955  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ACH24_05425  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ACH24_02640  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACH24_01625  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ACH24_00545  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ACH24_00550  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fper00010  Glycolysis / Gluconeogenesis
fper00061  Fatty acid biosynthesis
fper00190  Oxidative phosphorylation
fper00220  Arginine biosynthesis
fper00250  Alanine, aspartate and glutamate metabolism
fper00280  Valine, leucine and isoleucine degradation
fper00350  Tyrosine metabolism
fper00470  D-Amino acid metabolism
fper00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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