KEGG   PATHWAY: fpt00020
Entry
fpt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fpt00020  Citrate cycle (TCA cycle)
fpt00020

Module
fpt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fpt00020]
fpt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fpt00020]
fpt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fpt00020]
fpt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fpt00020]
Other DBs
GO: 0006099
Organism
Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L [GN:fpt]
Gene
BZ13_1061  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BZ13_1043  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BZ13_763  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BZ13_1056  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BZ13_1055  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BZ13_819  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BZ13_1827  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BZ13_1828  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
BZ13_1058  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BZ13_1057  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BZ13_1060  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BZ13_1059  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BZ13_1547  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
BZ13_1421  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BZ13_371  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
BZ13_1773  phosphoenolpyruvate carboxykinase family protein [KO:K01610] [EC:4.1.1.49]
BZ13_821  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BZ13_820  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fpt00010  Glycolysis / Gluconeogenesis
fpt00061  Fatty acid biosynthesis
fpt00071  Fatty acid degradation
fpt00190  Oxidative phosphorylation
fpt00220  Arginine biosynthesis
fpt00250  Alanine, aspartate and glutamate metabolism
fpt00280  Valine, leucine and isoleucine degradation
fpt00350  Tyrosine metabolism
fpt00470  D-Amino acid metabolism
fpt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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