KEGG   PATHWAY: frm00020
Entry
frm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella sp. MA067296
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
frm00020  Citrate cycle (TCA cycle)
frm00020

Module
frm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:frm00020]
frm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:frm00020]
frm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:frm00020]
frm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:frm00020]
frm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:frm00020]
Other DBs
GO: 0006099
Organism
Francisella sp. MA067296 [GN:frm]
Gene
BBG19_1601  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
BBG19_1585  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BBG19_0345  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BBG19_1596  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BBG19_1595  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BBG19_0291  Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
BBG19_1208  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
BBG19_1209  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
BBG19_1598  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BBG19_1597  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BBG19_1600  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
BBG19_1599  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BBG19_1440  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
BBG19_0204  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BBG19_0732  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BBG19_1256  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
BBG19_0289  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BBG19_0290  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
frm00010  Glycolysis / Gluconeogenesis
frm00061  Fatty acid biosynthesis
frm00071  Fatty acid degradation
frm00190  Oxidative phosphorylation
frm00220  Arginine biosynthesis
frm00250  Alanine, aspartate and glutamate metabolism
frm00280  Valine, leucine and isoleucine degradation
frm00350  Tyrosine metabolism
frm00470  D-Amino acid metabolism
frm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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