KEGG   PATHWAY: frt00020
Entry
frt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella salina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
frt00020  Citrate cycle (TCA cycle)
frt00020

Module
frt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:frt00020]
frt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:frt00020]
frt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:frt00020]
frt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:frt00020]
frt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:frt00020]
Other DBs
GO: 0006099
Organism
Francisella salina [GN:frt]
Gene
F7308_0570  Citrate synthase [KO:K01647] [EC:2.3.3.1]
F7308_0597  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
F7308_0837  Isocitrate dehydrogenase [NADP]; Monomeric isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
F7308_0576  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
F7308_0577  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
F7308_0785  Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
F7308_1747  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
F7308_1746  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
F7308_0574  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F7308_0575  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
F7308_0571  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
F7308_0573  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
F7308_0361  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
F7308_0212  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
F7308_1265  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F7308_1796  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
F7308_0782  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
F7308_0783  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
F7308_0784  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
frt00010  Glycolysis / Gluconeogenesis
frt00061  Fatty acid biosynthesis
frt00071  Fatty acid degradation
frt00190  Oxidative phosphorylation
frt00220  Arginine biosynthesis
frt00250  Alanine, aspartate and glutamate metabolism
frt00280  Valine, leucine and isoleucine degradation
frt00350  Tyrosine metabolism
frt00470  D-Amino acid metabolism
frt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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