KEGG   PATHWAY: ftc00020
Entry
ftc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. holarctica FTT_1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ftc00020  Citrate cycle (TCA cycle)
ftc00020

Module
ftc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ftc00020]
ftc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ftc00020]
ftc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ftc00020]
ftc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ftc00020]
ftc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ftc00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. holarctica FTT_1 [GN:ftc]
Gene
DA46_936  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DA46_954  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DA46_95  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
DA46_941  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
DA46_942  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
DA46_397  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DA46_1195  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
DA46_1196  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
DA46_939  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DA46_940  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
DA46_937  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DA46_938  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DA46_163  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
DA46_501  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
DA46_1816  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
DA46_1130  phosphoenolpyruvate carboxykinase family protein [KO:K01610] [EC:4.1.1.49]
DA46_399  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DA46_398  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ftc00010  Glycolysis / Gluconeogenesis
ftc00061  Fatty acid biosynthesis
ftc00071  Fatty acid degradation
ftc00190  Oxidative phosphorylation
ftc00220  Arginine biosynthesis
ftc00250  Alanine, aspartate and glutamate metabolism
ftc00280  Valine, leucine and isoleucine degradation
ftc00350  Tyrosine metabolism
ftc00470  D-Amino acid metabolism
ftc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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