KEGG   PATHWAY: ftd00020
Entry
ftd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. novicida F6168
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ftd00020  Citrate cycle (TCA cycle)
ftd00020

Module
ftd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ftd00020]
ftd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ftd00020]
ftd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ftd00020]
ftd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ftd00020]
ftd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ftd00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. novicida F6168 [GN:ftd]
Gene
AS84_850  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AS84_867  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AS84_1071  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AS84_855  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
AS84_856  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AS84_1013  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AS84_84  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AS84_83  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
AS84_853  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AS84_854  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
AS84_851  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AS84_852  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
AS84_354  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
AS84_490  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AS84_1549  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
AS84_140  phosphoenolpyruvate carboxykinase family protein [KO:K01610] [EC:4.1.1.49]
AS84_1011  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AS84_1012  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ftd00010  Glycolysis / Gluconeogenesis
ftd00061  Fatty acid biosynthesis
ftd00071  Fatty acid degradation
ftd00190  Oxidative phosphorylation
ftd00220  Arginine biosynthesis
ftd00250  Alanine, aspartate and glutamate metabolism
ftd00280  Valine, leucine and isoleucine degradation
ftd00350  Tyrosine metabolism
ftd00470  D-Amino acid metabolism
ftd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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