KEGG   PATHWAY: ftg00020
Entry
ftg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. tularensis TIGB03
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ftg00020  Citrate cycle (TCA cycle)
ftg00020

Module
ftg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ftg00020]
ftg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ftg00020]
ftg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ftg00020]
ftg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ftg00020]
ftg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ftg00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. tularensis TIGB03 [GN:ftg]
Gene
FTU_0067  gltA; Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
FTU_0083  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FTU_1541  idh; Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
FTU_0072  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FTU_0073  sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
FTU_1498  lpd; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FTU_0553  sucD; Succinyl-CoA ligase (ADP-forming) alpha chain [KO:K01902] [EC:6.2.1.5]
FTU_0554  sucC; Succinyl-CoA ligase (ADP-forming) beta chain [KO:K01903] [EC:6.2.1.5]
FTU_0070  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FTU_0071  sdhB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
FTU_0068  sdhC; Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
FTU_0069  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
FTU_1608  fumA; Fumarate hydratase class I aerobic [KO:K01676] [EC:4.2.1.2]
FTU_0286  fumC1; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
FTU_0369  fumC2; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
FTU_0582  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FTU_0500  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FTU_1500  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
FTU_1499  aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ftg00010  Glycolysis / Gluconeogenesis
ftg00061  Fatty acid biosynthesis
ftg00071  Fatty acid degradation
ftg00190  Oxidative phosphorylation
ftg00220  Arginine biosynthesis
ftg00250  Alanine, aspartate and glutamate metabolism
ftg00280  Valine, leucine and isoleucine degradation
ftg00470  D-Amino acid metabolism
ftg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system