KEGG   PATHWAY: ftn00020
Entry
ftn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. novicida U112
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ftn00020  Citrate cycle (TCA cycle)
ftn00020

Module
ftn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ftn00020]
ftn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ftn00020]
ftn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ftn00020]
ftn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ftn00020]
ftn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ftn00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. novicida U112 [GN:ftn]
Gene
FTN_1640  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
FTN_1623  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FTN_1434  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FTN_1635  sucA; 2-oxoglutarate dehydrogenase complex, E1 component, 2-oxoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
FTN_1634  sucB; 2-oxoglutarate dehydrogenase complex, E2 component, dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
FTN_1492  lpdA; pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FTN_0593  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
FTN_0594  sucC; succinyl-CoA synthetase, beta chain [KO:K01903] [EC:6.2.1.5]
FTN_1637  sdhA; succinate dehydrogenase flavoprotein [KO:K00239] [EC:1.3.5.1]
FTN_1636  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
FTN_1639  sdhC; succinate dehydrogenase, cytochrome b556 [KO:K00241]
FTN_1638  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
FTN_0337  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
FTN_0220  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
FTN_0980  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FTN_0540  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FTN_1494  aceE; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
FTN_1493  aceF; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ftn00010  Glycolysis / Gluconeogenesis
ftn00061  Fatty acid biosynthesis
ftn00071  Fatty acid degradation
ftn00190  Oxidative phosphorylation
ftn00220  Arginine biosynthesis
ftn00250  Alanine, aspartate and glutamate metabolism
ftn00280  Valine, leucine and isoleucine degradation
ftn00350  Tyrosine metabolism
ftn00470  D-Amino acid metabolism
ftn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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