KEGG   PATHWAY: fto00020
Entry
fto00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. holarctica PHIT-FT049
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fto00020  Citrate cycle (TCA cycle)
fto00020

Module
fto_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fto00020]
fto_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fto00020]
fto_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fto00020]
fto_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fto00020]
fto_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fto00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. holarctica PHIT-FT049 [GN:fto]
Gene
X557_09225  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
X557_09140  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
X557_03125  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
X557_09200  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
X557_09195  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
X557_01675  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
X557_08015  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
X557_08010  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
X557_09210  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
X557_09205  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
X557_09220  succinate dehydrogenase [KO:K00241]
X557_09215  succinate dehydrogenase [KO:K00242]
X557_02810  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
X557_01150  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
X557_05150  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
X557_08315  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
X557_01665  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
X557_01670  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fto00010  Glycolysis / Gluconeogenesis
fto00061  Fatty acid biosynthesis
fto00071  Fatty acid degradation
fto00190  Oxidative phosphorylation
fto00220  Arginine biosynthesis
fto00250  Alanine, aspartate and glutamate metabolism
fto00280  Valine, leucine and isoleucine degradation
fto00470  D-Amino acid metabolism
fto00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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